Olivier Bodenreider's Recent Presentations

2008

Bodenreider O.
The UMLS and the Semantic Web
BioRDF Teleconference, W3C Semantic Web Health Care and Life Sciences Interest Group, September 22, 2008.
[download PDF]
Bodenreider O.
RxNav: Interfaces to drug information sources
Presentation at the Lister Hill National Center for Biomedical Communications Brown Bag Lunch series, August 1, 2008.
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Bodenreider O.
Drug vocabulary integration at the National Library of Medicine
Seminar at the SPIM (Laboratoire de Santé Publique et Informatique Médicale) / INSERM (UMRS 872, équipe 20), University of Paris 5, Paris, France, June 30, 2008.
[download PDF]
Bodenreider O.
Ontologies and data integration in biomedicine: Success stories and challenging issues
Invited keynote presentation at the 5th International Workshop on Data Integration in the Life Sciences (DILS 2008), Evry, France, June 26, 2008.
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Bodenreider O.
Using Semantic Web technologies for terminology integration
Seminar at the Medical Informatics Laboratory, University of Rennes, France, June 24, 2008.
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Bodenreider O.
Biomedical ontologies in practice
Short course at the University of Utah, Department of Biomedical Informatics, Salt Lake City, Utah, June 9-11, 2008.
[download PDF] [download PDF (B&W slides)] [download PDF (handouts)]
Bodenreider O.
UMLS Semantic Network
Webcast from the UMLS Webcasts series, February 29, 2008.
[download PDF (color slides)] [download PDF (B&W slides)] [watch webcast (requires Flash Player)]

2007

Bodenreider O.
Terminological systems in biomedicine: From terminology integration to information integration
Invited keynote presentation at the 2nd International Symposium on Languages in Biology and Medicine (LBM 2007), Matrix, Biopolis, Singapore, December 6, 2007.
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Bodenreider O.
The Unified Medical Language System: What is it and how to use it?
Seminar at the Natural Language Processing and Computational Linguistics Research Lab, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea, December 4, 2007.
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Bodenreider O.
Aligning relationships in the UMLS: Methods and preliminary results
Seminar of the Department of Computer Science, New Jersey's Science and Technology University (NJIT), Newark, New Jersey, October 23, 2007.
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Bodenreider O.
Integrating biomedical information through Semantic Web technologies
Industry Programme Workshop on "Bridging Ontologies and Text Mining" at the European Biomedical Institute, Wellcome Trust Genome Campus, Hinxton, UK, September 14, 2007.
[download PDF]
Bodenreider O.
Biolexicon, bioterminologies and related resources
Workshop on "Bridging Ontologies and Text Mining" at the European Biomedical Institute, Wellcome Trust Genome Campus, Hinxton, UK, September 12, 2007.
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Bodenreider O.
The Unified Medical Language System: What is it and how to use it?
Tutorial at Medinfo 2007, Brisbane, Australia, August 19, 2007.
[download PDF] [download PDF (B&W slides)] [download PDF (B&W handouts)]
Bodenreider O, Rindflesch TC.
NLM Resources for Mining Biomedical Text
Presentation to the Research, Condition, and Disease Categorization (RCDC) project team, Bethesda, Maryland, July 17, 2007.
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Bodenreider O.
ICF, UMLS, and NLM
Panel presentation at ICDR Conference on New Federal Applications of the ICF, Arlington, Virginia, July 11, 2007.
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Bodenreider O, Rindflesch TC.
Biomedical Knowledge Repository and Semantic Medline
National Institute of Allergy and Infectious Diseases (NIAID), Bethesda, Maryland, June 25, 2007.
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Bodenreider O.
Bio-ontologies: The cream in the Semantic Web layer cake
Invited keynote presentation at NETTAB 2007 "A Semantic Web for Bioinformatics", Pisa, Italy, June 14, 2007.
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Bodenreider O.
The Unified Medical Language System (UMLS) and the Semantic Web
Tutorial at NETTAB 2007 "A Semantic Web for Bioinformatics", Pisa, Italy, June 12, 2007.
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Bodenreider O, Rindflesch TC, Ahlers C.
Integrating Biomedical Information in NLM's Biomedical Knowledge Repository
National Institute on Drug Abuse, Division of Basic Neuroscience and Behavior Research, Bethesda, Maryland, May 11, 2007.
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Bodenreider O.
Unified Medical Language System: The graph behind the forest.
Workshop on Associating Semantics with Graphs, Center for Dynamic Data Analysis (DynDAn), Center for Discrete Mathematics and Theoretical Computer Science (DIMACS), Rutgers University, Piscataway, New Jersey, April 16, 2007.
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Bodenreider O, Rindflesch TC.
Advanced library services: Developing a biomedical knowledge repository to support advanced information management applications
NCI Center for Bioinformatics Operations Meeting, NCI, Bethesda, Maryland, April 13, 2007.
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Rindflesch TC, Bodenreider O.
Semantic Medline: Overview and Demo
NINDS, Bethesda, Maryland, March 16, 2007.
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Bodenreider O.
Public health ontology vs. Ontology for public health.
Public Health Informatics Fellowship Program, Centers for Disease Control and Prevention, Atlanta, Georgia, February 23, 2007.
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Bodenreider O.
Evaluation of vocabulary review criteria: Application to the NCI Thesaurus
caBIG™ 2007 Annual Meeting (Session on "Evaluation of Vocabulary as caBIG™ Standards"), Washington, D.C., February 7, 2007.
[download PDF]
Bodenreider O, Rindflesch TC.
Advanced library services: Developing a biomedical knowledge repository to support advanced information management applications
Biomedical Information Science and Technology Initiative (BISTI) and Roadmap Implementation Working Group (RIWG), NIH, Bethesda, Maryland, February 1, 2007.
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2006

Bodenreider O.
Session 1: Information representation - Panel remarks
NIH Conference on Knowledge Environments for Biomedical Research (KEBR), Bethesda, Maryland, December 11, 2006.
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Bodenreider O.
Biomedical Ontologies: What are they good for?
Department of Computer Science, University of Missouri-Columbia, November 30, 2006.
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Bodenreider O.
Unified Medical Language System Semantic Navigator
Demonstration at the AMIA 2006 Symposium, Washington, DC, November 14, 2006.
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Zeng K, Bodenreider O, Kilbourne J, Nelson SJ.
RxNav: Providing Standard Drug Information
Theater-style demonstration at the AMIA 2006 Symposium, Washington, DC, November 13, 2006.
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Bodenreider O, Kashyap V, Neumann E.
Semantic Web for Health Care and Life Sciences
Tutorial at the AMIA 2006 Symposium, Washington, DC, November 11, 2006.
[download PDF]
Bodenreider O, Rindflesch TC.
Advanced library services: Developing a biomedical knowledge repository to support advanced information management applications
Forum on Informatics Solutions, NIH/NCRR, Bethesda, Maryland, November 3, 2006.
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Bodenreider O, Sahoo SS, Zeng K.
Integrating Biomedical Knowledge: Experience with Entrez Gene
NIH Research Festival, Bethesda, Maryland, October 17, 2006.
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Bodenreider O.
Ontologies for Data Integration: The Uniform Medical Language System
Manufacturing Metrology and Standards for the Health Care Enterprise Program, National Institute of Standards and Technology (NIST), Gaithersburg, Maryland, July 24, 2006.
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Bodenreider O.
From terminology integration to information integration: Unified Medical Language System (UMLS)
BioRDF Teleconference, W3C Semantic Web Health Care and Life Sciences Interest Group, June 5, 2006.
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Bodenreider O.
Visualization Tools for Biomedical Knowledge
Workshop on Humans and the Semantic Web, Human-Computer Interaction Laboratory, University of Maryland, College Park, Maryland, June 2, 2006.
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Bodenreider O.
Ontologies for data integration: A Semantic Web perspective
Training Course in Biomedical Ontology, Schloß Dagstuhl, Wadern, Germany, May 24, 2006.
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Bodenreider O.
Experience in aligning anatomical ontologies
Training Course in Biomedical Ontology, Schloß Dagstuhl, Wadern, Germany, May 23, 2006.
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Bodenreider O.
Enhancing ontologies through annotations
Training Course in Biomedical Ontology, Schloß Dagstuhl, Wadern, Germany, May 22, 2006.
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Bodenreider O.
Biomedical ontology and drug information
PharmaDiscovery 2006, Bethesda, Maryland, May 11, 2006.
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Bodenreider O.
Biomedical terminology and beyond: Ontology and terminology services
Invited keynote presentation at the Workshop on Foundations of Clinical Terminologies and Classifications (FCTC 2006), Timisoara, Romania, April 8, 2006.
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Bodenreider O.
UMLS and Semantic Web
Workshop on ontology "Focus on Immunology" organized by the Division of Allergy, Immunology and Transplantation, NIAID, NIH, March 21, 2006.
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Bodenreider O.
Ontological resources for the translational researcher
Workshop on "Navigating the Translational Researcher Through A Complex of Animal and Biological Resources", National Center for Research Resources (NCRR), NIH, March 6, 2006.
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Bodenreider O.
Biomedical resources for text mining
National Center for Text Mining, University of Manchester, UK, February 23, 2006.
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Bodenreider O.
Towards advanced library services
Workshop on "Semantic Enrichment of Scientific Literature" at the European Biomedical Institute, Wellcome Trust Genome Campus, Hinxton, UK, February 21, 2006.
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Bodenreider O.
NLM resources for semantic enrichment
Mini-symposium on "Semantic Enrichment of Scientific Literature" at the European Biomedical Institute, Wellcome Trust Genome Campus, Hinxton, UK, February 20, 2006.
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Bodenreider O.
Acquiring ontological relations from biomedical resources
Intelligent Systems Program, University of Pittsburgh, Pennsylvania, February 3, 2006.
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Bodenreider O.
Biomedical resources for text mining
Center for Biomedical Informatics, University of Pittsburgh, Pennsylvania, February 3, 2006.
[download PDF]

2005

Bodenreider O.
Introduction to the Unified Medical Language System
Department of Health Sciences Informatics, Johns Hopkins University, Baltimore, Maryland, November 29, 2005.
[download PDF]
Bodenreider O.
Biomedical resources for text mining.
Panel on "Ontological research and its applications to the biomedical domain" at ASIS&T 2005, Charlotte, North Carolina, November 1, 2005.
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Bodenreider O.
Enriching bio-ontologies with non-hierarchical relations.
Workshop on Bio-ontologies, National Center for Ontological Research, University at Buffalo, New York, October 28, 2005.
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Bodenreider O.
Lexical and statistical approaches to acquiring ontological relations.
Workshop on Ontological Foundations of Biomedical Terminology Systems at the AMIA 2005 Annual Symposium, Washington, DC, October 22, 2005.
[download PDF]
Bodenreider O.
The Unified Medical Language System: Integrating biomedical terminology.
Public Health Informatics Fellowship Program, Centers for Disease Control and Prevention, Atlanta, Georgia, October 14, 2005.
[download PDF]
Bodenreider O.
The Unified Medical Language System: An overview.
Ontology and Taxonomy Coordinating (ONTAC), Working Group, MITRE, McLean, Virginia, October 5, 2005.
[download PDF]
Bodenreider O.
Biomedical resources for text mining.
Workshop on Terminologies and ontologies in biomedicine: "Can text mining help?", Medical Informatics Europe 2005, Geneva, Switzerland, August 30, 2005.
[download PDF]
Bodenreider O.
The Unified Medical Language System: What is it and how to use it?
Tutorial at Medical Informatics Europe 2005, Geneva, Switzerland, August 28, 2005.
[download PDF] [download PDF (handouts)]
Bodenreider O.
Mapping new vocabularies to the UMLS: Experience with ICF.
New Freedom Initiative, ICF Subcommittee, HHS, July 21, 2005.
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Bodenreider O.
Mapping new vocabularies to the UMLS: Experience with ICF.
11th Annual North American Collaborating Center (NACC) Conference on the International Classification of Functioning, Disability and Health (ICF), Mayo Clinic, Rochester, MN, June 21, 2005.
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Bodenreider O.
From terminology integration to information integration: An example in the domain of genomics.
Biomedical Computing Interest Group, NIH, May 19, 2005.
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Bodenreider O.
Lexical and statistical approaches to acquiring ontological relations.
Conference on Ontology and Biomedical Informatics, Rome, Italy, May 1, 2005.
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Bodenreider O.
Analyzing anatomical ontologies with the RCC-8 model
Conference on Mapping the Human Body, University at Buffalo, NY, April 17, 2005.
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Bodenreider O.
Consistency between Metathesaurus and Semantic Network
Conference on The Future of the UMLS Semantic Network, National Library of Medicine, April 8, 2005.
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2004

Bodenreider O.
Introduction to the Unified Medical Language System
School of Nursing, Johns Hopkins University, Baltimore, Maryland, December 16, 2004.
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Bodenreider O.
The Unified Medical Language System: Identifying relations among biomedical terms
Workshop on Knowledge, Language and Informatics, Laboratoire d'Informatique de Paris-Nord, Villetaneuse, France, December 7, 2004.
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Bodenreider O.
The Unified Medical Language System: A two-level structure
INSERM ERM 202, Paris, France, December 6, 2004.
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Bodenreider O.
From terminology integration to information integration: An example in the domain of genomics.
Forum on Informatics Solutions, NIH/NCRR, Bethesda, Maryland, December 3, 2004.
[download PDF]
Bodenreider O.
What do biomedical terminologies tell us about biomedicine?
Conference on Medicine and Metaphysics, University at Buffalo, NY, November 13, 2004.
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Bodenreider O.
Large formal ontologies for biomedicine.
Panel at MedInfo 2004, San Francisco, California, September 10, 2004.
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Bodenreider O.
Foundational issues in biomedical ontologies.
Workshop at MedInfo 2004, San Francisco, California, September 9, 2004.
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Bodenreider O, Willis J, and Hole WT.
The Unified Medical Language System: What is it and how to use it?
Tutorial at MedInfo 2004, San Francisco, California, September 8, 2004.
[download PDF (presentation)] [download PDF (handouts)]
Bodenreider O.
Biomedical knowledge visualization.
Second Workshop on Visualizing Information in Knowledge Engineering (VIKE'04), July 6, 2004.
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Bodenreider O.
Medical knowledge representation: Issues, challenges, and new directions.
Panel on "Medical knowledge representation" at the First International Workshop on Formal Biomedical Knowledge Representation (KR-MED 2004), June 1, 2004.
[download PDF]

2003

Bodenreider O.
Information integration through terminology integration.
AMIA 2003 Panel "NLP for Biomedical Applications: Bridging Basic and Clinical Science", November 12, 2003.
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Bodenreider O.
From terminology integration to information integration: An example in the domain of genetics.
School of Information and Library Science, University of North Carolina at Chapel Hill, October 27, 2003.
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Bodenreider O.
From biomedical language to biomedical knowledge: Uncovering relations expressed through reification and other linguistic phenomena
Workshop on Ontologies in Medicine, Rome, Italy, October 8, 2003.
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Bodenreider O.
Issues and perspectives for medical text indexing
Workshop on the Semantic Web at the MIE 2003 Conference, St-Malo, France, May 6, 2003.
[download PDF]
Bodenreider O.
The Unified Medical Language System: What is it and how to use it?
Tutorial at the MIE 2003 Conference, St-Malo, France, May 4, 2003.
[download PDF]
Bodenreider O.
The Unified Medical Language System (UMLS): Between Terminology and Ontology
Columbia University, Department of Medical Informatics, April 29, 2002.
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Bodenreider O.
Integrating GO into UMLS
Pacific Symposium on Biocomputing, Kauai, Hawaii, January 7, 2003.
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2002

Bodenreider O, Hole WT, Humphreys BL, Roth LA, Srinivasan S.
Customizing the UMLS Metathesaurus for your applications
Tutorial at the AMIA 2002 Symposium, San Antonio, Texas, November 9, 2002.
[download PDF]
Bodenreider O.
From terminology integration to interoperability
Workshop on "Information Technologies for Healthcare: Barriers to Implementation", National Institute of Standards and Technology, August 1, 2002.
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Bodenreider O.
Issues in the visualization and navigation of biomedical knowledge
New Jersey Institute of Technology, College of Computing Sciences, Computer Science Department, April 29, 2002.
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Bodenreider O, Burgun A.
From UMLS concept spaces to a biomedical ontology.
Ontological Spring: An Introductory Workshop in Ontology, Institute for Formal Ontology and Medical Information Science, Naumburg, Germany, April 20, 2002.
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Bodenreider O, Burgun A.
What needs to be represented in a biomedical ontology?
Ontological Spring: An Introductory Workshop in Ontology, Institute for Formal Ontology and Medical Information Science, Naumburg, Germany, April 20, 2002.
[download PDF]
Burgun A, Bodenreider O.
Ontologies, Terminologies and Knowledge Bases in the Biomedical Domain
Ontological Spring: An Introductory Workshop in Ontology, Institute for Formal Ontology and Medical Information Science, Naumburg, Germany, April 19, 2002.
[download PDF]
Burgun A, Bodenreider O.
Examples of ontologies in the biomedical domain.
Ontological Spring: An Introductory Workshop in Ontology, Institute for Formal Ontology and Medical Information Science, Naumburg, Germany, April 19, 2002.
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Bodenreider O.
The U.S. National Library of Medicine. [French]
Journées ÉMOIS, March 21, 2002.
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2001

Bodenreider O.
Issues in the organization of biomedical knowledge.
School of Information and Library Science, University of North Carolina at Chapel Hill, December 3, 2001.
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Bodenreider O, Hole WT, Humphreys BL, Roth LA, Srinivasan S.
Customizing the UMLS Metathesaurus for your applications
Tutorial at the AMIA 2001 Symposium, Washington, D.C., November 3, 2001.
[download PDF]

Last modified by Olivier Bodenreider: Wed Sep 24 19:34:52 2008