2009

• Bodenreider O.
  Challenges and promises of the Semantic Web in health care and life sciences
  Invited talk at the Special Library Association Annual Conference 2009 / Biomedical & Life Sciences Division, Washington, DC, June 15, 2009.
  [download PDF]

• Bodenreider O.
  From biomedical informatics to translational research
  Seminar at the Case Western Reserve University Electrical Engineering and Computer Science Department, Cleveland, Ohio, May 28, 2009.
  [download PDF]

• Bodenreider O.
  Ontologies and data integration in biomedicine
  Seminar at Kno.e.sis, College of Engineering and Computer Science, Wright State university, Dayton, Ohio, May 27, 2009.
  [download PDF]

• Bodenreider O.
  From biomedical informatics to translational research
  Seminar at the Wright State university Biomedical Sciences Ph.D. Program retreat, Dayton, Ohio, May 27, 2009.
  [download PDF]

• Bodenreider O.
  UMLS and semantic integration
  LifeWatch WP5 workshop on "Semantic Data Integration", Amsterdam, The Netherlands, May 18, 2009.
  [download PDF]

• Bodenreider O.
  Building Ontologies -- Best practices, pitfalls and positives
  Invited keynote presentation at the 2009 NIGMS Cell Behavior Ontology Workshop , National Institutes of Health Campus, Bethesda, MD, May 4, 2009.
  [download PDF]

• Bodenreider O.
  Reconciling annotations made to different terminologies
  Second Workshop on "Semantic Enrichment of Scientific Literature" (SESL 2009) at the European Biomedical Institute, Wellcome Trust Genome Campus, Hinxton, UK, March 31, 2009.
  [download PDF]

• Bodenreider O.
  Yes We Can: From biomedical informatics to translational research
  Inserm U936 "Modélisation des connaissances biomédicales" inaugural event, Rennes, France, February 6, 2009.
  [download PDF]

2008

• Burgun A, Mougin F, Bodenreider O.
  UMLS and phenotype coding
  One Medicine One Pathology: The Second Annual CASIMIR symposium on Human and Mouse Disease Informatics, CASIMIR - Coordination and Sustainability of International Mouse Informatics Resources, December 2, 2008.
  [download PDF]

• Bodenreider O.
  Ontologies and data integration in biomedicine: What is in there for Public Health?
  Webcast organized by the Public Health Informatics Fellowship Program, Centers for Disease Control and Prevention, Atlanta, Georgia, November 21, 2008.
  [download PDF]

• Bodenreider O.
  Ontologies for mining biomedical data
  Invited keynote presentation at the 2nd IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2008), Philadelphia, Pennsylvania, November 5, 2008.
  [download PDF]

• Bodenreider O.
  The UMLS and the Semantic Web
  BioRDF Teleconference, W3C Semantic Web Health Care and Life Sciences Interest Group, September 22, 2008.
  [download PDF]

• Bodenreider O.
  RxNav: Interfaces to drug information sources
  Presentation at the Lister Hill National Center for Biomedical Communications Brown Bag Lunch series, August 1, 2008.
  [download PDF]

• Bodenreider O.
  Drug vocabulary integration at the National Library of Medicine
  Seminar at the SPIM (Laboratoire de Santé Publique et Informatique Médicale) / INSERM (UMRS 872, équipe 20), University of Paris 5, Paris, France, June 30, 2008.
  [download PDF]

• Bodenreider O.
  Ontologies and data integration in biomedicine: Success stories and challenging issues
  Invited keynote presentation at the 5th International Workshop on Data Integration in the Life Sciences (DILS 2008), Evry, France, June 26, 2008.
  [download PDF]

• Bodenreider O.
  Using Semantic Web technologies for terminology integration
  Seminar at the Medical Informatics Laboratory, University of Rennes, France, June 24, 2008.
  [download PDF]

• Bodenreider O.
  Biomedical ontologies in practice
  Short course at the University of Utah, Department of Biomedical Informatics, Salt Lake City, Utah, June 9-11, 2008.
  [download PDF] [download PDF (B&W slides)] [download PDF (handouts)]

• Bodenreider O.
  UMLS Semantic Network
  Webcast from the UMLS Webcasts series, February 29, 2008.
  [download PDF (color slides)] [download PDF (B&W slides)] [watch webcast (requires Flash Player)]

2007

• Bodenreider O.
  Terminological systems in biomedicine: From terminology integration to information integration
  Invited keynote presentation at the 2nd International Symposium on Languages in Biology and Medicine (LBM 2007), Matrix, Biopolis, Singapore, December 6, 2007.
  [download PDF]

• Bodenreider O.
  The Unified Medical Language System: What is it and how to use it?
  Seminar at the Natural Language Processing and Computational Linguistics Research Lab, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea, December 4, 2007.
  [download PDF]

• Bodenreider O.
  Aligning relationships in the UMLS: Methods and preliminary results
  Seminar of the Department of Computer Science, New Jersey's Science and Technology University (NJIT), Newark, New Jersey, October 23, 2007.
  [download PDF]

• Bodenreider O.
  Integrating biomedical information through Semantic Web technologies
  Industry Programme Workshop on "Bridging Ontologies and Text Mining" at the European Biomedical Institute, Wellcome Trust Genome Campus, Hinxton, UK, September 14, 2007.
  [download PDF]

• Bodenreider O.
  Biolexicon, bioterminologies and related resources
  Workshop on "Bridging Ontologies and Text Mining" at the European Biomedical Institute, Wellcome Trust Genome Campus, Hinxton, UK, September 12, 2007.
  [download PDF]

• Bodenreider O.
  The Unified Medical Language System: What is it and how to use it?
  Tutorial at Medinfo 2007, Brisbane, Australia, August 19, 2007.
  [download PDF] [download PDF (B&W slides)] [download PDF (B&W handouts)]

• Bodenreider O, Rindflesch TC.
  NLM Resources for Mining Biomedical Text
  Presentation to the Research, Condition, and Disease Categorization (RCDC) project team, Bethesda, Maryland, July 17, 2007.
  [download PDF]

• Bodenreider O.
  ICF, UMLS, and NLM
  Panel presentation at ICDR Conference on New Federal Applications of the ICF, Arlington, Virginia, July 11, 2007.
  [download PDF]

• Bodenreider O, Rindflesch TC.
  Biomedical Knowledge Repository and Semantic Medline
  National Institute of Allergy and Infectious Diseases (NIAID), Bethesda, Maryland, June 25, 2007.
  [download PDF]

• Bodenreider O.
  Bio-ontologies: The cream in the Semantic Web layer cake
  Invited keynote presentation at NETTAB 2007 "A Semantic Web for Bioinformatics", Pisa, Italy, June 14, 2007.
  [download PDF]

• Bodenreider O.
  The Unified Medical Language System (UMLS) and the Semantic Web
  Tutorial at NETTAB 2007 "A Semantic Web for Bioinformatics", Pisa, Italy, June 12, 2007.
  [download PDF]

• Bodenreider O, Rindflesch TC, Ahlers C.
  Integrating Biomedical Information in NLM's Biomedical Knowledge Repository
  National Institute on Drug Abuse, Division of Basic Neuroscience and Behavior Research, Bethesda, Maryland, May 11, 2007.
  [download PDF]

• Bodenreider O.
  Unified Medical Language System: The graph behind the forest.
  Workshop on Associating Semantics with Graphs, Center for Dynamic Data Analysis (DynDAn), Center for Discrete Mathematics and Theoretical Computer Science (DIMACS), Rutgers University, Piscataway, New Jersey, April 16, 2007.
  [download PDF]

• Bodenreider O, Rindflesch TC.
  Advanced library services: Developing a biomedical knowledge repository to support advanced information management applications
  NCI Center for Bioinformatics Operations Meeting, NCI, Bethesda, Maryland, April 13, 2007.
  [download PDF]

• Rindflesch TC, Bodenreider O.
  Semantic Medline: Overview and Demo
  NINDS, Bethesda, Maryland, March 16, 2007.
  [download PDF]

• Bodenreider O.
  Public health ontology vs. Ontology for public health.
  Public Health Informatics Fellowship Program, Centers for Disease Control and Prevention, Atlanta, Georgia, February 23, 2007.
  [download PDF]

• Bodenreider O.
  Evaluation of vocabulary review criteria: Application to the NCI Thesaurus
  caBIG™ 2007 Annual Meeting (Session on "Evaluation of Vocabulary as caBIG™ Standards"), Washington, D.C., February 7, 2007.
  [download PDF]

• Bodenreider O, Rindflesch TC.
  Advanced library services: Developing a biomedical knowledge repository to support advanced information management applications
  Biomedical Information Science and Technology Initiative (BISTI) and Roadmap Implementation Working Group (RIWG), NIH, Bethesda, Maryland, February 1, 2007.
  [download PDF]

2006

• Bodenreider O.
  Session 1: Information representation - Panel remarks
  NIH Conference on Knowledge Environments for Biomedical Research (KEBR), Bethesda, Maryland, December 11, 2006.
  [download PDF]

• Bodenreider O.
  Biomedical Ontologies: What are they good for?
  Department of Computer Science, University of Missouri-Columbia, November 30, 2006.
  [download PDF]

• Bodenreider O.
  Unified Medical Language System Semantic Navigator
  Demonstration at the AMIA 2006 Symposium, Washington, DC, November 14, 2006.
  [download PDF]

• Zeng K, Bodenreider O, Kilbourne J, Nelson SJ.
  RxNav: Providing Standard Drug Information
  Theater-style demonstration at the AMIA 2006 Symposium, Washington, DC, November 13, 2006.
  [download PDF]

• Bodenreider O, Kashyap V, Neumann E.
  Semantic Web for Health Care and Life Sciences
  Tutorial at the AMIA 2006 Symposium, Washington, DC, November 11, 2006.
  [download PDF]

• Bodenreider O, Rindflesch TC.
  Advanced library services: Developing a biomedical knowledge repository to support advanced information management applications
  Forum on Informatics Solutions, NIH/NCRR, Bethesda, Maryland, November 3, 2006.
  [download PDF]

• Bodenreider O, Sahoo SS, Zeng K.
  Integrating Biomedical Knowledge: Experience with Entrez Gene
  NIH Research Festival, Bethesda, Maryland, October 17, 2006.
  [download PDF]

• Bodenreider O.
  Ontologies for Data Integration: The Unified Medical Language System
  Manufacturing Metrology and Standards for the Health Care Enterprise Program, National Institute of Standards and Technology (NIST), Gaithersburg, Maryland, July 24, 2006.
  [download PDF]

• Bodenreider O.
  From terminology integration to information integration: Unified Medical Language System (UMLS)
  BioRDF Teleconference, W3C Semantic Web Health Care and Life Sciences Interest Group, June 5, 2006.
  [download PDF]

• Bodenreider O.
  Visualization Tools for Biomedical Knowledge
  Workshop on Humans and the Semantic Web, Human-Computer Interaction Laboratory, University of Maryland, College Park, Maryland, June 2, 2006.
  [download PDF]

• Bodenreider O.
  Ontologies for data integration: A Semantic Web perspective
  Training Course in Biomedical Ontology, Schloß Dagstuhl, Wadern, Germany, May 24, 2006.
  [download PDF]

• Bodenreider O.
  Experience in aligning anatomical ontologies
  Training Course in Biomedical Ontology, Schloß Dagstuhl, Wadern, Germany, May 23, 2006.
  [download PDF]

• Bodenreider O.
  Enhancing ontologies through annotations
  Training Course in Biomedical Ontology, Schloß Dagstuhl, Wadern, Germany, May 22, 2006.
  [download PDF]

• Bodenreider O.
  Biomedical ontology and drug information
  PharmaDiscovery 2006, Bethesda, Maryland, May 11, 2006.
  [download PDF]

• Bodenreider O.
  Biomedical terminology and beyond: Ontology and terminology services
  Invited keynote presentation at the Workshop on Foundations of Clinical Terminologies and Classifications (FCTC 2006), Timisoara, Romania, April 8, 2006.
  [download PDF]

• Bodenreider O.
  UMLS and Semantic Web
  Workshop on ontology "Focus on Immunology" organized by the Division of Allergy, Immunology and Transplantation, NIAID, NIH, March 21, 2006.
  [download PDF]

• Bodenreider O.
  Ontological resources for the translational researcher
  Workshop on "Navigating the Translational Researcher Through A Complex of Animal and Biological Resources", National Center for Research Resources (NCRR), NIH, March 6, 2006.
  [download PDF]

• Bodenreider O.
  Biomedical resources for text mining
  National Center for Text Mining, University of Manchester, UK, February 23, 2006.
  [download PDF]

• Bodenreider O.
  Towards advanced library services
  Workshop on "Semantic Enrichment of Scientific Literature" at the European Biomedical Institute, Wellcome Trust Genome Campus, Hinxton, UK, February 21, 2006.
  [download PDF]

• Bodenreider O.
  NLM resources for semantic enrichment
  Mini-symposium on "Semantic Enrichment of Scientific Literature" at the European Biomedical Institute, Wellcome Trust Genome Campus, Hinxton, UK, February 20, 2006.
  [download PDF]

• Bodenreider O.
  Acquiring ontological relations from biomedical resources
  Intelligent Systems Program, University of Pittsburgh, Pennsylvania, February 3, 2006.
  [download PDF]

• Bodenreider O.
  Biomedical resources for text mining
  Center for Biomedical Informatics, University of Pittsburgh, Pennsylvania, February 3, 2006.
  [download PDF]

2005

• Bodenreider O.
  Introduction to the Unified Medical Language System
  Department of Health Sciences Informatics, Johns Hopkins University, Baltimore, Maryland, November 29, 2005.
  [download PDF]

• Bodenreider O.
  Biomedical resources for text mining.
  Panel on "Ontological research and its applications to the biomedical domain" at ASIS&T 2005, Charlotte, North Carolina, November 1, 2005.
  [download PDF]

• Bodenreider O.
  Enriching bio-ontologies with non-hierarchical relations.
  Workshop on Bio-ontologies, National Center for Ontological Research, University at Buffalo, New York, October 28, 2005.
  [download PDF]

• Bodenreider O.
  Lexical and statistical approaches to acquiring ontological relations.
  Workshop on Ontological Foundations of Biomedical Terminology Systems at the AMIA 2005 Annual Symposium, Washington, DC, October 22, 2005.
  [download PDF]

• Bodenreider O.
  The Unified Medical Language System: Integrating biomedical terminology.
  Public Health Informatics Fellowship Program, Centers for Disease Control and Prevention, Atlanta, Georgia, October 14, 2005.
  [download PDF]

• Bodenreider O.
  The Unified Medical Language System: An overview.
  Ontology and Taxonomy Coordinating (ONTAC), Working Group, MITRE, McLean, Virginia, October 5, 2005.
  [download PDF]

• Bodenreider O.
  Biomedical resources for text mining.
  Workshop on Terminologies and ontologies in biomedicine: "Can text mining help?", Medical Informatics Europe 2005, Geneva, Switzerland, August 30, 2005.
  [download PDF]

• Bodenreider O.
  The Unified Medical Language System: What is it and how to use it?
  Tutorial at Medical Informatics Europe 2005, Geneva, Switzerland, August 28, 2005.
  [download PDF] [download PDF (handouts)]

• Bodenreider O.
  Mapping new vocabularies to the UMLS: Experience with ICF.
  New Freedom Initiative, ICF Subcommittee, HHS, July 21, 2005.
  [download PDF]

• Bodenreider O.
  Mapping new vocabularies to the UMLS: Experience with ICF.
  11th Annual North American Collaborating Center (NACC) Conference on the International Classification of Functioning, Disability and Health (ICF), Mayo Clinic, Rochester, MN, June 21, 2005.
  [download PDF]

• Bodenreider O.
  From terminology integration to information integration: An example in the domain of genomics.
  Biomedical Computing Interest Group, NIH, May 19, 2005.
  [download PDF]

• Bodenreider O.
  Lexical and statistical approaches to acquiring ontological relations.
  Conference on Ontology and Biomedical Informatics, Rome, Italy, May 1, 2005.
  [download PDF]

• Bodenreider O.
  Analyzing anatomical ontologies with the RCC-8 model
  Conference on Mapping the Human Body, University at Buffalo, NY, April 17, 2005.
  [download PDF]

• Bodenreider O.
  Consistency between Metathesaurus and Semantic Network
  Conference on The Future of the UMLS Semantic Network, National Library of Medicine, April 8, 2005.
  [download PDF]

2004

• Bodenreider O.
  Introduction to the Unified Medical Language System
  School of Nursing, Johns Hopkins University, Baltimore, Maryland, December 16, 2004.
  [download PDF]

• Bodenreider O.
  The Unified Medical Language System: Identifying relations among biomedical terms
  Workshop on Knowledge, Language and Informatics, Laboratoire d'Informatique de Paris-Nord, Villetaneuse, France, December 7, 2004.
  [download PDF]

• Bodenreider O.
  The Unified Medical Language System: A two-level structure
  INSERM ERM 202, Paris, France, December 6, 2004.
  [download PDF]

• Bodenreider O.
  From terminology integration to information integration: An example in the domain of genomics.
  Forum on Informatics Solutions, NIH/NCRR, Bethesda, Maryland, December 3, 2004.
  [download PDF]

• Bodenreider O.
  What do biomedical terminologies tell us about biomedicine?
  Conference on Medicine and Metaphysics, University at Buffalo, NY, November 13, 2004.
  [download PDF]

• Bodenreider O.
  Large formal ontologies for biomedicine.
  Panel at MedInfo 2004, San Francisco, California, September 10, 2004.
  [download PDF]

• Bodenreider O.
  Foundational issues in biomedical ontologies.
  Workshop at MedInfo 2004, San Francisco, California, September 9, 2004.
  [download PDF]

• Bodenreider O, Willis J, and Hole WT.
  The Unified Medical Language System: What is it and how to use it?
  Tutorial at MedInfo 2004, San Francisco, California, September 8, 2004.
  [download PDF (presentation)] [download PDF (handouts)]

• Bodenreider O.
  Biomedical knowledge visualization.
  Second Workshop on Visualizing Information in Knowledge Engineering (VIKE'04), July 6, 2004.
  [download PDF]

• Bodenreider O.
  Medical knowledge representation: Issues, challenges, and new directions.
  Panel on "Medical knowledge representation" at the First International Workshop on Formal Biomedical Knowledge Representation (KR-MED 2004), June 1, 2004.
  [download PDF]

2003

• Bodenreider O.
  Information integration through terminology integration.
  AMIA 2003 Panel "NLP for Biomedical Applications: Bridging Basic and Clinical Science", November 12, 2003.
  [download PDF]

• Bodenreider O.
  From terminology integration to information integration: An example in the domain of genetics.
  School of Information and Library Science, University of North Carolina at Chapel Hill, October 27, 2003.
  [download PDF]

• Bodenreider O.
  From biomedical language to biomedical knowledge: Uncovering relations expressed through reification and other linguistic phenomena
  Workshop on Ontologies in Medicine, Rome, Italy, October 8, 2003.
  [download PDF]

• Bodenreider O.
  Issues and perspectives for medical text indexing
  Workshop on the Semantic Web at the MIE 2003 Conference, St-Malo, France, May 6, 2003.
  [download PDF]

• Bodenreider O.
  The Unified Medical Language System: What is it and how to use it?
  Tutorial at the MIE 2003 Conference, St-Malo, France, May 4, 2003.
  [download PDF]

• Bodenreider O.
  The Unified Medical Language System (UMLS): Between Terminology and Ontology
  Columbia University, Department of Medical Informatics, April 29, 2002.
  [download PDF]

• Bodenreider O.
  Integrating GO into UMLS
  Pacific Symposium on Biocomputing, Kauai, Hawaii, January 7, 2003.
  [download PDF]

2002

• Bodenreider O, Hole WT, Humphreys BL, Roth LA, Srinivasan S.
  Customizing the UMLS Metathesaurus for your applications
  Tutorial at the AMIA 2002 Symposium, San Antonio, Texas, November 9, 2002.
  [download PDF]

• Bodenreider O.
  From terminology integration to interoperability
  Workshop on "Information Technologies for Healthcare: Barriers to Implementation", National Institute of Standards and Technology, August 1, 2002.
  [download PDF]

• Bodenreider O.
  Issues in the visualization and navigation of biomedical knowledge
  New Jersey Institute of Technology, College of Computing Sciences, Computer Science Department, April 29, 2002.
  [download PDF]

• Bodenreider O, Burgun A.
  From UMLS concept spaces to a biomedical ontology.
  Ontological Spring: An Introductory Workshop in Ontology, Institute for Formal Ontology and Medical Information Science, Naumburg, Germany, April 20, 2002.
  [download PDF]

• Bodenreider O, Burgun A.
  What needs to be represented in a biomedical ontology?
  Ontological Spring: An Introductory Workshop in Ontology, Institute for Formal Ontology and Medical Information Science, Naumburg, Germany, April 20, 2002.
  [download PDF]

• Burgun A, Bodenreider O.
  Ontologies, Terminologies and Knowledge Bases in the Biomedical Domain
  Ontological Spring: An Introductory Workshop in Ontology, Institute for Formal Ontology and Medical Information Science, Naumburg, Germany, April 19, 2002.
  [download PDF]

• Burgun A, Bodenreider O.
  Examples of ontologies in the biomedical domain.
  Ontological Spring: An Introductory Workshop in Ontology, Institute for Formal Ontology and Medical Information Science, Naumburg, Germany, April 19, 2002.
  [download PDF]

• Bodenreider O.
  The U.S. National Library of Medicine. [French]
  Journées ÉMOIS, March 21, 2002.
  [download PDF]

2001

• Bodenreider O.
  Issues in the organization of biomedical knowledge.
  School of Information and Library Science, University of North Carolina at Chapel Hill, December 3, 2001.
  [download PDF]

• Bodenreider O, Hole WT, Humphreys BL, Roth LA, Srinivasan S.
  Customizing the UMLS Metathesaurus for your applications
  Tutorial at the AMIA 2001 Symposium, Washington, D.C., November 3, 2001.
  [download PDF]

Last modified by Olivier Bodenreider: Mon Jun 15 19:09:36 2009